Plotting

Plotting#

plotting.barplot(data[, modal, key, n_top, ...])

Plot top features per group as bar charts.

plotting.rankplot(data[, modal, key, n_top, ...])

Plot ranked features per group with label annotations.

plotting.circosplot(data[, modal, ...])

Plot a Circos plot for GRN analysis with an optional central embedding scatter plot.

plotting.heatmap(data, var_names[, modal, ...])

Plot time series for genes as a heatmap.

plotting.trendplot(data, var_dict[, sortby, ...])

Plot variable trends along a sorted dimension (e.g., pseudotime).

plotting.stripplot(data[, modal, key, ...])

Plot a PairGrid of the top n-th genes with high-network scores, with isolated plotting parameters and italicized gene labels.

plotting.distplot(data_dict, thresholds[, ...])

Plot the distribution of multiple parameters with thresholds on separate subplots.

plotting.GRNVisualizer(gdata)

Class for visualizing gene regulatory networks (GRNs) from GRNMuData objects.

plotting.GenomeViewer(data[, modal, gtf, ...])

A class to visualize genomic loci, including coverage tracks, gene annotations, and other genomic features.