API

Import scMagnify as:

import scmagnify as scm

scMagnify has a modular API:

• Models
  • scmagnify.MAGNI
  • scmagnify.MSNGC
  • scmagnify.partial_ordering
  • scmagnify.chromatin_constraint
  • scmagnify.import_basalGRN
• Tools
  • scmagnify.tools.lineage_classifer
  • scmagnify.tools.select_paga_path
  • scmagnify.tools.test_association
  • scmagnify.tools.build_metacells_SEACells
  • scmagnify.tools.connect_peaks_genes
  • scmagnify.tools.MotifScanner
  • scmagnify.tools.convert_motif_format
  • scmagnify.tools.get_network_score
  • scmagnify.tools.RegDecomp
  • scmagnify.tools.extract_regfactor_genes
  • scmagnify.tools.FuncEnrich
  • scmagnify.tools.infer_signal_pairs
• Plotting
  • scmagnify.plotting.barplot
  • scmagnify.plotting.rankplot
  • scmagnify.plotting.circosplot
  • scmagnify.plotting.heatmap
  • scmagnify.plotting.trendplot
  • scmagnify.plotting.stripplot
  • scmagnify.plotting.distplot
  • scmagnify.plotting.GRNVisualizer
  • scmagnify.plotting.GenomeViewer
• Datasets
• Settings