Tutorials# Cell State Transition Analysis with scMagnify Preliminaries Import packages Configurations Load the data Fate mapping with CellRank Selecting by Lineage Classifer Feature Association Test Visualize the Gene Expression Dynamics Closing matters TF Binding Network Construction with scMagnify Preliminaries Import packages Configurations Load the data Metacell/Pseudobulk construction Conduct lineage-specifc scATACseq analysis Save the data Closing matters Multi-scale Gene Regulation Inference and Analysis with scMagnify Preliminaries Input GRNMuData Import packages Configurations Load the data Train the model Regulation Inference Regulatory Activity Network Analysis Closing matters RegFactor Decomposition with scMagnify Preliminaries Configurations Load the data RegFactor Decomposition Funch Enrich Network Visualization Genomic Viewer Save the Data Closing matters Intracellular Communication Modeling with scMagnify Preliminaries Import packages Configurations Load the Data RegFactor Analysis Cell-cell Communication with Liana+ Intracellular Communication Visualization Save the data
