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About the scMagnify
API
Models
scmagnify.MAGNI
scmagnify.MSNGC
scmagnify.partial_ordering
scmagnify.chromatin_constraint
scmagnify.import_basalGRN
Tools
scmagnify.tools.lineage_classifer
scmagnify.tools.select_paga_path
scmagnify.tools.test_association
scmagnify.tools.build_metacells_SEACells
scmagnify.tools.connect_peaks_genes
scmagnify.tools.MotifScanner
scmagnify.tools.convert_motif_format
scmagnify.tools.get_network_score
scmagnify.tools.RegDecomp
scmagnify.tools.extract_regfactor_genes
scmagnify.tools.FuncEnrich
scmagnify.tools.infer_signal_pairs
Plotting
scmagnify.plotting.barplot
scmagnify.plotting.rankplot
scmagnify.plotting.circosplot
scmagnify.plotting.heatmap
scmagnify.plotting.trendplot
scmagnify.plotting.stripplot
scmagnify.plotting.distplot
scmagnify.plotting.GRNVisualizer
scmagnify.plotting.GenomeViewer
Datasets
Settings
Tutorials
Cell State Transition Analysis with scMagnify
TF Binding Network Construction with scMagnify
Multi-scale Gene Regulation Inference and Analysis with scMagnify
RegFactor Decomposition with scMagnify
Intracellular Communication Modeling with scMagnify
Changelog
Contributing guide
References
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